STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM05630.1Sugar phosphate isomerase/epimerase. (309 aa)    
Predicted Functional Partners:
SDM05282.1
L-ribulose 5-phosphate 4-epimerase.
  
 
  0.762
SDM52534.1
Sugar phosphate isomerase/epimerase.
  
  
  0.664
SDL30568.1
Predicted dehydrogenase.
  
    0.652
SDM05602.1
Transcriptional regulator, DeoR family.
  
    0.635
SDL26932.1
Protein of unknown function.
  
     0.626
SDL76066.1
Predicted neuraminidase (sialidase).
  
     0.527
SDM02578.1
Predicted dehydrogenase.
  
    0.527
SDM81640.1
Calcineurin-like phosphoesterase superfamily domain-containing protein.
  
     0.468
SDM22891.1
Predicted dehydrogenase.
  
    0.461
SDM05575.1
Nudix-type nucleoside diphosphatase, YffH/AdpP family.
       0.450
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.