STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM10884.1Starch-binding associating with outer membrane. (631 aa)    
Predicted Functional Partners:
SDM10910.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.943
SDL60230.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.798
SDM87020.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 
 0.798
SDL25226.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.737
SDM10853.1
Fe-S oxidoreductase.
    
  0.723
SDM54210.1
FAD/FMN-containing dehydrogenase.
    
  0.723
SDM11088.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.718
SDL86517.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.690
SDL25254.1
Starch-binding associating with outer membrane.
  
     0.682
SDM05495.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.677
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.