STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM19640.1Outer membrane receptor proteins, mostly Fe transport. (797 aa)    
Predicted Functional Partners:
SDM19616.1
Protein of unknown function.
 
    0.943
SDL16527.1
Protein of unknown function.
 
    0.779
SDL16560.1
Protein of unknown function.
 
    0.779
SDM17515.1
Starch-binding associating with outer membrane.
  
 
   0.647
SDL77169.1
Protein of unknown function.
 
     0.582
SDL25821.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.551
SDM17538.1
Protein of unknown function.
  
     0.526
SDL86940.1
TonB family C-terminal domain-containing protein.
  
 
   0.511
SDM05466.1
Starch-binding associating with outer membrane.
  
 
   0.486
SDM73312.1
Starch-binding associating with outer membrane.
  
 
   0.475
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.