STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM20960.1Glucose-fructose oxidoreductase. (360 aa)    
Predicted Functional Partners:
SDM20984.1
Enterochelin esterase.
       0.773
SDM68231.1
Predicted dehydrogenase.
  
     0.716
SDM21016.1
Endo-1,4-beta-xylanase.
       0.658
SDL46210.1
Predicted dehydrogenase.
  
     0.495
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
   
   0.426
SDN08206.1
Galactokinase; Belongs to the GHMP kinase family.
   
   0.426
SDM20933.1
Starch-binding associating with outer membrane.
       0.424
SDM20906.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.407
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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