STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM23277.1alpha-L-rhamnosidase. (901 aa)    
Predicted Functional Partners:
SDL30782.1
Predicted neuraminidase (sialidase).
 
 
  0.888
SDL60769.1
Predicted neuraminidase (sialidase).
 
 
  0.885
SDM23246.1
Beta-galactosidase.
  
    0.778
SDM23306.1
Sugar phosphate isomerase/epimerase.
 
     0.681
SDL27654.1
Hypothetical protein.
  
     0.667
SDM00862.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
   0.562
SDM82568.1
Hypothetical protein.
 
     0.559
SDL22455.1
Glycosyl hydrolases family 2, sugar binding domain.
  
     0.545
SDL27713.1
Hypothetical protein.
  
     0.519
SDL14990.1
Hypothetical protein.
  
     0.507
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.