STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM38970.1Hypothetical protein. (481 aa)    
Predicted Functional Partners:
SDL56409.1
DNA sulfur modification protein DndE; Belongs to the glycosyl hydrolase 28 family.
    
  0.573
SDM38940.1
Por secretion system C-terminal sorting domain-containing protein.
  
   0.530
SDM39021.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
  
   0.497
SDL57414.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
    
   0.476
SDM38999.1
FKBP-type peptidyl-prolyl cis-trans isomerase FklB.
       0.454
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.