STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM39916.1Uncharacterized conserved protein YbbC, DUF1343 family. (372 aa)    
Predicted Functional Partners:
SDL77820.1
Beta-glucosidase.
 
 0.901
SDM37189.1
CubicO group peptidase, beta-lactamase class C family.
 
    0.901
SDM58872.1
Beta-glucosidase.
 
 0.839
SDL80690.1
CubicO group peptidase, beta-lactamase class C family.
 
    0.687
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
    0.572
SDM86369.1
Muramoyltetrapeptide carboxypeptidase.
  
     0.550
SDL88082.1
CubicO group peptidase, beta-lactamase class C family.
 
    0.544
SDM39949.1
Predicted arabinose efflux permease, MFS family.
       0.538
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.