STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM44881.1Uncharacterized conserved protein YafD, endonuclease/exonuclease/phosphatase (EEP) superfamily. (319 aa)    
Predicted Functional Partners:
SDM44774.1
SH3 domain-containing protein.
       0.480
SDM44798.1
Beta-lactamase enzyme family protein.
       0.480
SDM44828.1
7-keto-8-aminopelargonate synthetase.
       0.480
SDM44858.1
L-alanine-DL-glutamate epimerase.
       0.480
SDM96669.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
  
  
  0.442
SDM40520.1
MarR family transcriptional regulator, repressor for mepA.
  
     0.434
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.