STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM54654.1GWxTD domain-containing protein. (422 aa)    
Predicted Functional Partners:
SDM54681.1
23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.810
SDM83257.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.750
SDM83593.1
Gliding motility-associated C-terminal domain-containing protein; Partial gene; manually curated.
  
     0.729
SDM61646.1
Gliding motility-associated C-terminal domain-containing protein; Partial gene; manually curated.
  
     0.728
SDM76890.1
Hypothetical protein; Partial gene; manually curated.
  
     0.719
SDL62061.1
Hypothetical protein; Partial gene; manually curated.
  
     0.716
SDM01377.1
Component of the Tol biopolymer transport system.
  
     0.715
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.709
SDM26507.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.707
SDM20393.1
Hypothetical protein.
  
     0.702
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.