STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM57643.1Starch-binding associating with outer membrane. (522 aa)    
Predicted Functional Partners:
SDM57617.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.968
SDM08261.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.751
SDM69531.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.720
SDN08336.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.709
SDM54890.1
Protein of unknown function.
  
     0.697
SDM57555.1
Hypothetical protein.
 
     0.685
SDM57705.1
Phosphonate degradation operons associated HDIG domain protein.
 
     0.682
SDL55599.1
SusD family protein.
  
 
   0.674
SDN04382.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.630
SDM57520.1
Phosphonatase-like hydrolase; Manually curated.
 
     0.619
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.