STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM65644.1Fumarylacetoacetate hydrolase. (401 aa)    
Predicted Functional Partners:
SDM65538.1
Homogentisate 1,2-dioxygenase.
  
 0.963
SDM65588.1
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.913
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.893
SDL61995.1
Succinate dehydrogenase subunit A.
  
 
  0.884
SDL61964.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 
  0.877
SDL62025.1
Succinate dehydrogenase / fumarate reductase cytochrome b subunit; Manually curated.
    
  0.875
SDM65666.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
 
  
 0.842
SDM65566.1
Phenylalanine 4-hydroxylase.
 
  
 0.709
SDM10853.1
Fe-S oxidoreductase.
  
 
 0.702
SDM54210.1
FAD/FMN-containing dehydrogenase.
  
 
 0.702
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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