STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM76938.1TonB-dependent Receptor Plug Domain. (797 aa)    
Predicted Functional Partners:
SDM76979.1
ElaA protein.
       0.773
SDM77022.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.773
SDM77062.1
Hypothetical protein.
 
   0.767
SDL86920.1
Protein TonB.
  
   0.716
SDL58520.1
Hypothetical protein.
 
     0.684
SDM67353.1
TonB protein C-terminal.
  
   0.655
SDL25127.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.626
SDN09689.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.602
SDL40657.1
PAP2 superfamily protein.
  
 
   0.574
SDL86867.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.570
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.