STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM80669.1Hydroxypyruvate isomerase. (287 aa)    
Predicted Functional Partners:
SDM09667.1
Hydroxypyruvate isomerase.
  
  
  0.906
SDM56291.1
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
 0.876
SDM92297.1
Nucleoside transporter.
 
     0.758
SDL23153.1
Nucleoside transporter.
 
     0.756
SDM47570.1
Protein of unknown function.
 
   
 0.711
SDL95901.1
Protein of unknown function.
 
   
 0.655
SDL69594.1
Predicted dehydrogenase.
 
    0.591
SDM67524.1
Gluconate 2-dehydrogenase subunit 3.
 
     0.579
SDM80736.1
Histidine triad (HIT) family protein.
  
    0.579
SDM18699.1
Protein of unknown function.
  
     0.578
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.