STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM82877.1Gluconate 2-dehydrogenase subunit 3. (204 aa)    
Predicted Functional Partners:
SDM82819.1
Choline dehydrogenase.
 
  
  0.902
SDM09667.1
Hydroxypyruvate isomerase.
  
     0.627
SDM67524.1
Gluconate 2-dehydrogenase subunit 3.
  
  
  0.606
SDM17005.1
Protein of unknown function.
  
     0.565
SDM97251.1
Gluconate 2-dehydrogenase subunit 3.
  
  
  0.564
SDM82848.1
Four helix bundle protein.
       0.533
SDM47570.1
Protein of unknown function.
 
     0.506
SDM25961.1
Choline dehydrogenase.
 
  
  0.504
SDM97279.1
Choline dehydrogenase.
 
  
  0.501
SDM56544.1
Choline dehydrogenase.
 
  
  0.500
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.