STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM83288.1PASTA domain, binds beta-lactams. (268 aa)    
Predicted Functional Partners:
SDM83257.1
Por secretion system C-terminal sorting domain-containing protein.
       0.802
SDM40073.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
 
 0.801
SDM83224.1
Rhodanese-related sulfurtransferase.
       0.742
SDL80322.1
Penicillin-binding protein 1A.
  
 
 0.732
SDL55080.1
Penicillin-binding protein 2.
 
  
 0.703
SDL16814.1
Protein of unknown function.
  
     0.680
SDM36101.1
Protein of unknown function.
  
     0.680
SDM09378.1
Lipopolysaccharide export system permease protein; Manually curated.
  
     0.672
SDL73366.1
Tetratricopeptide repeat-containing protein.
  
     0.657
SDM03267.1
Cell division protein FtsI (penicillin-binding protein 3).
 
  
 0.655
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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