STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM98717.1Putative auto-transporter adhesin, head GIN domain. (229 aa)    
Predicted Functional Partners:
SDM98746.1
Zn-dependent protease with chaperone function.
       0.773
SDN05654.1
Pentapeptide repeat-containing protein.
  
 
   0.571
SDM98774.1
Putative NADH-flavin reductase.
       0.522
SDL58520.1
Hypothetical protein.
    
   0.497
SDM19447.1
Ion channel.
    
   0.497
SDL55813.1
Hypothetical protein.
  
 
   0.492
SDM82507.1
Acetyltransferase (GNAT) domain-containing protein.
  
    0.457
SDM18201.1
Putative auto-transporter adhesin, head GIN domain.
 
   
0.447
SDM20906.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.418
SDM83042.1
Vitamin B12 transporter.
  
     0.415
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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