STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN00255.1RNA polymerase sigma-70 factor, ECF subfamily. (182 aa)    
Predicted Functional Partners:
SDN00224.1
FecR family protein.
 
   0.952
SDL20529.1
FecR family protein.
  
   0.793
SDL86488.1
FecR family protein.
  
   0.793
SDL26128.1
FecR family protein.
  
   0.789
SDM70741.1
FecR family protein.
  
   0.789
SDL11430.1
FecR family protein.
  
   0.788
SDL74098.1
FecR family protein.
  
   0.787
SDL14747.1
FecR family protein.
  
   0.785
SDN05850.1
FecR family protein.
  
   0.784
SDM66881.1
FecR family protein.
  
   0.783
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.