STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN00385.1Cytochrome c-type biogenesis protein CcmF. (868 aa)    
Predicted Functional Partners:
SDN00415.1
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.975
SDN00482.1
Heme exporter protein C.
 
  
 0.927
SDN00449.1
Hypothetical protein.
 
     0.904
SDM03416.1
Oxygen tolerance.
 
 
 0.902
SDN00511.1
Heme exporter protein B.
 
  
 0.896
SDL97049.1
Lipopolysaccharide biosynthesis regulator YciM, contains six TPR domains and a predicted metal-binding C-terminal domain.
  
 
 0.807
SDM19585.1
Uncharacterized conserved protein, Ntn-hydrolase superfamily.
  
 
 0.787
SDM89552.1
Tetratricopeptide repeat-containing protein.
  
     0.706
SDM01377.1
Component of the Tol biopolymer transport system.
  
     0.702
SDL45048.1
Hypothetical protein.
  
     0.685
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.