STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN00734.1L-rhamnose mutarotase. (109 aa)    
Predicted Functional Partners:
SDM03691.1
L-fuconolactonase.
 
  
 0.866
SDM00927.1
Sugar (pentulose or hexulose) kinase.
  
  
 0.810
SDL41487.1
Xylulokinase.
  
  
 0.800
SDM18600.1
Gluconate kinase, FGGY family; Belongs to the FGGY kinase family.
  
  
 0.800
SDM03721.1
L-fucose dehydrogenase.
 
    0.788
SDN00791.1
GH3 auxin-responsive promoter.
     
 0.747
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
       0.741
SDM35077.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
    0.704
SDN00712.1
HEAT repeat-containing protein.
       0.686
SDM37480.1
MFS transporter, FHS family, L-fucose permease.
 
  
 0.585
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.