STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN04382.1TonB-linked outer membrane protein, SusC/RagA family. (1120 aa)    
Predicted Functional Partners:
SDN04412.1
Starch-binding associating with outer membrane.
 
 
   0.957
SDM97775.1
Starch-binding associating with outer membrane.
  
 
   0.859
SDM00074.1
Starch-binding associating with outer membrane.
 
 
   0.853
SDL24236.1
Starch-binding associating with outer membrane.
 
 
   0.852
SDL99305.1
Starch-binding associating with outer membrane.
 
 
   0.852
SDM11065.1
Starch-binding associating with outer membrane.
  
 
   0.819
SDL25254.1
Starch-binding associating with outer membrane.
  
 
   0.813
SDL27899.1
Starch-binding associating with outer membrane.
 
 
   0.811
SDL96663.1
Starch-binding associating with outer membrane.
 
 
   0.790
SDL73599.1
Starch-binding associating with outer membrane.
 
 
   0.764
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.