STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV46129.1ImpA family type VI secretion-associated protein. (344 aa)    
Predicted Functional Partners:
EFV46134.2
Type VI secretion protein; Overlaps another CDS with the same product name.
 
 
 0.986
EFV46130.1
EvpB/family type VI secretion protein.
 
 
 0.973
EPC05758.1
Type VI secretion protein.
 
 
 0.942
EFV46131.1
Hcp1 family type VI secretion system effector.
 
 
 0.935
EFV46135.2
Type VI secretion system Vgr family protein.
 
  
 0.907
EFV46133.1
Type VI secretion protein; Overlaps another CDS with the same product name.
 
  
 0.897
EFV46154.1
DotU family type IV/VI secretion system protein.
 
  
 0.820
EFV46153.1
Hypothetical protein.
  
 
 0.729
EFV46128.1
Type VI secretion lipoprotein.
  
  
 0.695
EFV46136.1
Hypothetical protein.
 
  
 0.626
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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