STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV46078.1Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family. (199 aa)    
Predicted Functional Partners:
EFV44550.1
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
   
 0.915
EFV46079.1
Hypothetical protein.
 
    0.904
EFV43712.1
Selenide, water dikinase.
 
   
 0.811
EFV43852.1
Selenocysteine-specific translation elongation factor.
 
   
 0.799
EFV43562.1
NADH oxidase.
  
 
 0.786
EFV46080.1
Hypothetical protein.
 
     0.766
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.754
EFV44262.1
Hypothetical protein.
 
  
 0.684
EFV43421.1
YqeB family selenium-dependent molybdenum hydroxylase system protein.
  
     0.626
EFV44170.1
Hypothetical protein.
 
   
 0.586
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.