STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV45904.1CRISPR-associated helicase cas3, subtype I-f/ypest. (1079 aa)    
Predicted Functional Partners:
cas1
CRISPR-associated endonuclease cas1, subtype I-f/ypest; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.974
EFV45901.1
CRISPR type I-f/ypest-associated protein csy3.
 
   
 0.972
EFV45900.2
CRISPR-associated protein cas6/csy4, subtype I-f/ypest.
     
 0.886
EFV45902.1
CRISPR type I-f/ypest-associated protein csy2.
     
 0.871
EFV45903.1
Hypothetical protein.
       0.786
EFV42553.2
Similar to chlamydial polymorphic outer membrane protein.
  
     0.709
EFV44269.1
Outer membrane autotransporter barrel domain-containing protein.
  
     0.639
EFV45664.2
Similar to chlamydial polymorphic outer membrane protein.
  
     0.616
EFV44296.2
Outer membrane autotransporter barrel domain-containing protein.
  
     0.567
EFV45615.1
VCBS protein.
  
     0.552
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.