STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV45679.2Oxygen-dependent protoporphyrinogen oxidase. (457 aa)    
Predicted Functional Partners:
EFV44503.1
Cobaltochelatase subunit.
  
 
 0.784
EFV46144.2
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.765
EFV46151.1
MtaA/CmuA family methyltransferase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.765
EFV45007.1
MtaA/CmuA family methyltransferase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.765
EFV45008.2
MtaA/CmuA family methyltransferase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.765
EFV45009.2
Uroporphyrinogen decarboxylase.
  
 
 0.765
EFV45032.2
uroporphyrinogen-III C-methyltransferase.
  
 
 0.756
EFV45278.1
Acetylornithine/succinylornithine family transaminase.
     
 0.671
EFV44505.2
Cobaltochelatase, CobN subunit.
     
 0.668
EFV43164.1
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.658
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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