Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFV45641.1Pyrrolysine biosynthesis radical SAM protein. (350 aa)    
Predicted Functional Partners:
EFV45640.1
Pyrrolysine biosynthesis protein PylC.
 
 
  0.986
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.906
EFV43597.1
Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
     
  0.800
EPC05769.1
pyrrolysine-tRNA ligase, N-terminal region; overlaps another CDS with the same product name.
       0.773
EPC05770.1
pyrrolysine-tRNA ligase, C-terminal region; overlaps another CDS with the same product name.
       0.773
EFV44882.2
Thiamine biosynthesis ThiH; Overlaps another CDS with the same product name.
  
   
 0.741
EFV44339.1
Hypothetical protein.
  
     0.723
EFV44340.1
Hypothetical protein.
  
     0.723
EFV46145.1
Hypothetical protein.
  
     0.717
EFV44878.1
[FeFe] hydrogenase H-cluster maturation GTPase HydF.
 
   
 0.703
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.