Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFV45188.1Zinc transport system substrate-binding protein. (306 aa)    
Predicted Functional Partners:
EFV45186.1
Zinc transport system permease.
 
 
 0.998
EFV45187.1
Zinc transport system ATP-binding protein.
 
  
  0.989
EFV43612.1
Molybdate transport system ATP-binding protein.
  
  
 0.937
rpsZ
30S ribosomal protein S14 type Z; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.684
fur
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
 
  
 0.682
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.653
EFV46150.1
Hypothetical protein.
  
  
 0.622
EFV45010.1
Hypothetical protein.
  
  
 0.622
EFV42819.2
Hypothetical protein.
  
  
 0.622
EFV43010.1
Hypothetical protein.
  
  
 0.464
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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