Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFV45131.1Type II secretion system protein D. (665 aa)    
Predicted Functional Partners:
EFV45132.1
Hypothetical protein.
 
 
 0.984
EFV45133.1
Hypothetical protein.
 
  
 0.948
EFV45130.1
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.938
EFV45124.1
Type II secretion system protein G.
  
 0.907
EFV43259.1
YscR/HrcR family type III secretion apparatus protein.
  
 
 0.894
EFV43230.1
Type III secretion apparatus protein SpaR/YscT/HrcT.
  
 
 0.873
EFV43231.1
HrpO family type III secretion protein.
  
 
 0.872
EFV43252.2
YscJ/HrcJ family type III secretion apparatus lipoprotein.
  
 
 0.872
EFV43232.1
HrcV family type III secretion protein.
  
 
 0.800
EFV44229.1
Hypothetical protein.
 
  
 0.719
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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