Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFV44806.1Hypothetical protein. (309 aa)    
Predicted Functional Partners:
EFV42983.1
Hypothetical protein.
  
     0.664
EFV44807.1
Hypothetical protein.
 
    0.653
EFV44813.1
TonB-dependent siderophore receptor.
 
   
 0.643
EFV44812.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
   
 0.609
EFV44808.1
Hypothetical protein.
       0.586
EFV45938.1
Hypothetical protein.
  
     0.577
EFV44809.2
Hypothetical protein; Belongs to the P-Pant transferase superfamily.
       0.567
EFV44820.1
ATP-binding cassette, subfamily B, bacterial; Overlaps another CDS with the same product name.
 
  
 0.534
EFV44821.1
ATP-binding cassette, subfamily B, bacterial; Overlaps another CDS with the same product name.
 
  
 0.525
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.494
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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