Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFV44871.1Nickel ABC transporter, permease subunit NikB. (309 aa)    
Predicted Functional Partners:
EFV44872.1
Nickel transport system permease.
 0.998
EFV44873.1
Nickel transport system ATP-binding protein; Overlaps another CDS with the same product name.
 0.994
EFV44870.1
Nickel ABC transporter, nickel/metallophore periplasmic binding protein.
 0.991
EFV44874.2
Nickel transport system ATP-binding protein; Overlaps another CDS with the same product name.
 
 0.990
EFV45890.2
Glutathione transport system permease gsiD.
 
 0.970
EFV44580.1
Peptide/nickel transport system permease; Overlaps another CDS with the same product name.
 
 0.969
EFV44869.2
Peptide/nickel transport system substrate-binding protein.
 
 0.963
EFV44848.1
Peptide/nickel transport system permease.
 
 
 0.932
EFV46085.1
Peptide/nickel transport system permease; Overlaps another CDS with the same product name.
 
 
 0.930
EFV45888.1
Glutathione transport system substrate-binding protein.
 
 
 0.892
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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