Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFV44240.1DNA topoisomerase III. (771 aa)    
Predicted Functional Partners:
EFV45589.2
ATP-dependent DNA helicase RecQ.
 
 
 0.967
recA
Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
 0.826
EFV46051.2
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
   0.809
EFV44560.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
   0.809
EFV44700.1
Exonuclease SbcC.
 
 0.729
EFV44241.1
Hypothetical protein.
       0.709
EPC05793.1
Hypothetical protein.
       0.709
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.670
EFV43222.1
Lambda family phage tail tape measure protein.
  
 0.646
EPC05792.1
Hypothetical protein.
       0.634
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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