Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFV43737.1Hypothetical protein. (424 aa)    
Predicted Functional Partners:
EFV45167.1
Riboflavin synthase, alpha subunit.
     
  0.900
EFV43560.1
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
     
  0.900
EFV44296.2
Outer membrane autotransporter barrel domain-containing protein.
  
     0.728
EFV44527.1
TIGR00156 family protein.
  
     0.655
EFV42553.2
Similar to chlamydial polymorphic outer membrane protein.
  
     0.645
EFV42871.1
Hypothetical protein.
  
     0.617
EFV44746.1
TIGR00156 family protein.
  
     0.598
EFV44325.1
Hypothetical protein.
  
     0.591
EFV44372.1
Hypothetical protein.
  
     0.570
EFV45664.2
Similar to chlamydial polymorphic outer membrane protein.
  
     0.541
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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