Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFV43643.1Hypothetical protein. (158 aa)    
Predicted Functional Partners:
EFV45209.2
Hypothetical protein.
 
 
  0.999
EFV45206.1
Radical SAM additional 4Fe4S-binding SPASM domain-containing protein.
 
 
 0.983
EFV45208.2
Radical SAM protein.
 
  
 0.826
EFV43642.1
Hypothetical protein.
       0.768
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
     
 0.651
EFV45032.2
uroporphyrinogen-III C-methyltransferase.
 
  
 0.490
EFV43641.1
Hydrogenase expression/formation protein HypD; Belongs to the HypD family.
       0.487
EFV44381.1
His-Xaa-Ser system radical SAM maturase HxsC.
 
  
 0.435
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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