STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV43240.1Type III secretion low calcium response chaperone LcrH/SycD. (165 aa)    
Predicted Functional Partners:
EFV43241.1
Hypothetical protein.
  
 
 0.983
EFV43252.2
YscJ/HrcJ family type III secretion apparatus lipoprotein.
  
  
 0.861
EFV43236.1
Type III secretion regulator YopN/LcrE/InvE/MxiC.
  
    0.842
EFV43247.1
YscD/HrpQ family type III secretion apparatus protein.
  
  
 0.775
EFV43232.1
HrcV family type III secretion protein.
  
  
 0.765
EFV43231.1
HrpO family type III secretion protein.
  
  
 0.729
EFV46051.2
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
   
   0.716
EFV44560.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
   
   0.716
EFV43254.1
HrpE/YscL family type III secretion apparatus protein.
  
  
 0.715
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.695
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.