STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV43246.2YscC/HrcC family type III secretion outer membrane pore. (624 aa)    
Predicted Functional Partners:
EFV43252.2
YscJ/HrcJ family type III secretion apparatus lipoprotein.
 
 
 0.981
EFV43230.1
Type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.962
EFV43231.1
HrpO family type III secretion protein.
 
 
 0.941
EFV43259.1
YscR/HrcR family type III secretion apparatus protein.
 
 
 0.930
EFV45132.1
Hypothetical protein.
  
 
 0.892
EFV43247.1
YscD/HrpQ family type III secretion apparatus protein.
  
  
 0.879
EFV43254.1
HrpE/YscL family type III secretion apparatus protein.
 
  
 0.872
EFV43232.1
HrcV family type III secretion protein.
 
 
 0.863
EFV43245.1
Hypothetical protein.
       0.773
EFV43248.1
Hypothetical protein.
       0.773
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.