Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFV43167.1Hypothetical protein. (412 aa)    
Predicted Functional Partners:
EFV43227.1
Hypothetical protein.
  
     0.716
EFV43808.1
Hypothetical protein.
 
    0.704
rny
2',3'-cyclic-nucleotide 2'-phosphodiesterase; Endoribonuclease that initiates mRNA decay.
  
  
 0.658
EPC05815.1
Hypothetical protein.
  
  
 0.653
EFV43166.1
Hypothetical protein.
  
  
 0.634
EFV43506.1
Hypothetical protein.
  
     0.625
EFV45090.2
Hypothetical protein.
  
  
 0.616
EFV44429.1
Hypothetical protein.
  
     0.609
EFV42929.1
Hypothetical protein.
  
     0.608
EFV45787.1
Hypothetical protein.
  
     0.598
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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