Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFV43006.1Biopolymer transporter ExbB. (212 aa)    
Predicted Functional Partners:
EFV43007.1
Hypothetical protein.
 
 
 0.978
EFV43008.2
TonB family domain-containing protein.
  
 
 0.948
EPC05704.1
Hypothetical protein.
 
 
 0.922
EFV43697.1
Protein TolR.
 
 
 0.895
EFV42821.2
Biopolymer transporter ExbD.
 
 
 0.895
EFV43000.1
TonB-dependent heme/hemoglobin receptor family protein.
 
  
 0.817
EFV44613.1
Lipopolysaccharide export system ATP-binding protein.
  
   
 0.757
EFV43005.1
Hypothetical protein.
 
    0.742
EFV43004.1
Hypothetical protein.
 
    0.656
lpxA
acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
  
 0.655
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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