Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFV42871.1Hypothetical protein. (324 aa)    
Predicted Functional Partners:
EFV42872.1
Two-component system, NtrC family, response regulator.
       0.773
EFV44527.1
TIGR00156 family protein.
  
     0.683
EFV42868.1
Serine/threonine-protein kinase HipA.
       0.655
EFV42869.1
Hypothetical protein.
       0.655
EFV42870.1
Hypothetical protein.
       0.655
EFV45732.2
Hypothetical protein.
  
     0.647
EFV43737.1
Hypothetical protein.
  
     0.617
EFV44746.1
TIGR00156 family protein.
  
     0.587
EFV44296.2
Outer membrane autotransporter barrel domain-containing protein.
  
     0.519
EFV44800.1
drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter; Belongs to the major facilitator superfamily.
  
     0.490
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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