STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV42820.2Hypothetical protein. (257 aa)    
Predicted Functional Partners:
EFV42821.2
Biopolymer transporter ExbD.
 
 
 0.978
EPC05704.1
Hypothetical protein.
 
 
 0.943
EFV43007.1
Hypothetical protein.
 
 
 0.921
EFV43697.1
Protein TolR.
 
 
 0.908
EFV42795.1
TonB family domain-containing protein.
  
 
 0.907
EFV43008.2
TonB family domain-containing protein.
  
 
 0.857
EFV42819.2
Hypothetical protein.
  
  
 0.774
EFV44613.1
Lipopolysaccharide export system ATP-binding protein.
  
   
 0.742
EFV44506.1
Hypothetical protein.
 
  
 0.688
lpxA
acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
   
 0.624
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.