Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFV42736.1Cobalamin biosynthesis protein CbiM. (201 aa)    
Predicted Functional Partners:
EFV42738.1
Cobalt ABC transporter, permease CbiQ.
 
 
 0.996
EFV42739.1
Cobalt/nickel transport system ATP-binding protein.
 
 
 0.994
EFV42735.1
Hypothetical protein.
  
 0.990
EFV42737.1
Hypothetical protein.
 
    0.962
EFV42681.1
Hypothetical protein.
 
  
 0.956
EFV43997.1
Hypothetical protein.
 
  
 0.898
EFV46157.1
Precorrin-4 C11-methyltransferase.
  
  
 0.801
EFV44998.1
Precorrin-4 C11-methyltransferase; Belongs to the precorrin methyltransferase family.
  
  
 0.801
EFV43316.1
Hypothetical protein.
 
    0.690
EFV43318.2
Hypothetical protein.
 
    0.690
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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