Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFV42628.2Hypothetical protein. (251 aa)    
Predicted Functional Partners:
EFV42627.1
Hypothetical protein.
       0.552
EFV42624.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein; Overlaps another CDS with the same product name.
       0.549
EFV42625.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein; Overlaps another CDS with the same product name.
       0.549
EFV42626.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein; Overlaps another CDS with the same product name.
       0.549
EFV42623.1
Hypothetical protein.
       0.545
EFV45244.1
Hypothetical protein.
  
 0.506
EFV44708.2
Hypothetical protein.
 
   
 0.415
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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