STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV42572.1Hypothetical protein. (1027 aa)    
Predicted Functional Partners:
EFV44612.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.750
EFV44944.2
PAS domain S-box protein.
   
 
 0.718
EFV42573.1
Hypothetical protein.
       0.527
EPC05822.1
Hypothetical protein.
       0.506
EFV43310.1
Hypothetical protein.
   
 
 0.500
EFV42571.2
Hypothetical protein.
       0.487
EFV45956.2
PAS domain S-box protein.
   
 
 0.469
EPC05948.1
Hypothetical protein.
   
 
 0.468
EFV43563.1
Hypothetical protein.
   
 
 0.450
EFV43115.1
Hypothetical protein.
   
 
 0.450
Your Current Organism:
Bilophila wadsworthia
NCBI taxonomy Id: 563192
Other names: B. wadsworthia 3_1_6, Bilophila wadsworthia 3_1_6, Bilophila wadsworthia str. 3_1_6, Bilophila wadsworthia strain 3_1_6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.