STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KZE11645.1Transcription elongation factor NusA; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)    
Predicted Functional Partners:
KZE09183.1
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KZE09184.1
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KZE15792.1
DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KZE10937.1
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.996
KZE11643.1
Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.995
KZE10935.1
Transcription termination/antitermination protein NusG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
rpsJ
30S ribosomal protein S10; NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
KZE15374.1
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
KZE08719.1
DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
KZE15933.1
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
Your Current Organism:
Sphingomonas hankookensis
NCBI taxonomy Id: 563996
Other names: CCUG 57509, KCTC 22579, S. hankookensis, Sphingomonas hankookensis Yoon et al. 2009, Sphingomonas sp. ODN7, strain ODN7
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