STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KZE11678.1Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)    
Predicted Functional Partners:
fusA
Elongation factor G; EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.970
KZE10889.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.957
KZE15807.1
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.954
KZE15915.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.948
KZE18968.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.944
KZE18095.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.939
KZE17728.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.939
KZE15854.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.927
KZE13516.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.921
KZE15900.1
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.919
Your Current Organism:
Sphingomonas hankookensis
NCBI taxonomy Id: 563996
Other names: CCUG 57509, KCTC 22579, S. hankookensis, Sphingomonas hankookensis Yoon et al. 2009, Sphingomonas sp. ODN7, strain ODN7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.