STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KZE08684.1Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)    
Predicted Functional Partners:
KZE08683.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.750
KZE08682.1
Thiol-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.715
KZE14988.1
Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.589
KZE17169.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.571
hemH
Ferrochelatase; Protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.516
KZE14995.1
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.457
Your Current Organism:
Sphingomonas hankookensis
NCBI taxonomy Id: 563996
Other names: CCUG 57509, KCTC 22579, S. hankookensis, Sphingomonas hankookensis Yoon et al. 2009, Sphingomonas sp. ODN7, strain ODN7
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