STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KZE08579.1RNA pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)    
Predicted Functional Partners:
KZE18968.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.923
KZE11704.1
tRNA modification GTPase TrmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.919
KZE15797.1
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.909
KZE15932.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.909
KZE18325.1
RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.906
KZE15791.1
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.898
KZE15806.1
50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.894
KZE11532.1
Ribosome-associated protein IOJAP; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.890
KZE08578.1
Peptide chain release factor I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.882
KZE17294.1
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.882
Your Current Organism:
Sphingomonas hankookensis
NCBI taxonomy Id: 563996
Other names: CCUG 57509, KCTC 22579, S. hankookensis, Sphingomonas hankookensis Yoon et al. 2009, Sphingomonas sp. ODN7, strain ODN7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.