STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KZE17094.1Xylan 1,4-beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)    
Predicted Functional Partners:
KZE18887.1
Xylan 1,4-beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.928
KZE13393.1
Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.919
KZE17095.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.909
KZE17096.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.852
KZE11769.1
alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.812
KZE14698.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.709
KZE09214.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.706
KZE14699.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
KZE15314.1
Alpha-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.663
KZE09170.1
Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.628
Your Current Organism:
Sphingomonas hankookensis
NCBI taxonomy Id: 563996
Other names: CCUG 57509, KCTC 22579, S. hankookensis, Sphingomonas hankookensis Yoon et al. 2009, Sphingomonas sp. ODN7, strain ODN7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.