STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002067135_04009Unannotated protein. (144 aa)    
Predicted Functional Partners:
GCA_002067135_04004
Unannotated protein.
    
  0.552
GCA_002067135_01384
Unannotated protein.
  
     0.532
GCA_002067135_04007
Unannotated protein.
       0.522
GCA_002067135_04008
Unannotated protein.
       0.522
GCA_002067135_04005
Unannotated protein.
       0.486
GCA_002067135_04388
Unannotated protein.
  
     0.458
GCA_002067135_04006
Unannotated protein.
       0.436
GCA_002067135_00423
Unannotated protein.
  
     0.435
Your Current Organism:
Spirosoma rigui
NCBI taxonomy Id: 564064
Other names: KCTC 12531, NBRC 101117, S. rigui, Spirosoma rigui Baik et al. 2007, strain WPCB118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.