STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002067135_04239Unannotated protein. (221 aa)    
Predicted Functional Partners:
GCA_002067135_00521
Unannotated protein.
 
 0.993
GCA_002067135_04031
Unannotated protein.
  
 
 0.991
GCA_002067135_04024
Unannotated protein.
 
  
 0.932
GCA_002067135_01737
Unannotated protein.
 
 
 0.927
GCA_002067135_01353
Unannotated protein.
 
 
 0.919
GCA_002067135_04594
Unannotated protein.
 
 
 0.916
GCA_002067135_01533
Unannotated protein.
 
  
 0.915
GCA_002067135_00121
Unannotated protein.
 
 
 0.906
GCA_002067135_02996
Unannotated protein.
 
 
 0.902
GCA_002067135_02495
Unannotated protein.
  
 
 0.892
Your Current Organism:
Spirosoma rigui
NCBI taxonomy Id: 564064
Other names: KCTC 12531, NBRC 101117, S. rigui, Spirosoma rigui Baik et al. 2007, strain WPCB118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.