STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWRI3579_g4150RNA polymerase II transcription factor B subunit 3; Acts as component of the general transcription and DNA repair factor IIH (TFIIH or factor B), which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA. (326 aa)    
Predicted Functional Partners:
AWRI3579_g3022
Cyclin CCL1; Belongs to the cyclin family.
   
 0.999
AWRI3579_g904
Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily.
    
 0.999
AWRI3579_g412
DNA repair helicase RAD3.
    
 0.999
AWRI3579_g3999
Suppressor of stem-loop protein 1.
   
 0.996
AWRI3579_g3575
DNA repair helicase RAD25.
    
 0.996
AWRI3579_g2165
RNA polymerase II transcription factor B subunit 4.
    
 0.996
AWRI3579_g3569
RNA polymerase II transcription factor B subunit 1.
    
 0.994
AWRI3579_g3362
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.994
AWRI3579_g3985
Transcription initiation factor IIE subunit beta.
   
 0.993
AWRI3579_g2507
Transcription initiation factor IIE subunit alpha.
    
 0.992
Your Current Organism:
Hanseniaspora osmophila
NCBI taxonomy Id: 56408
Other names: ATCC 24231, CBS 313, CCRC 21475, CCRC:21475, DBVPG 6795, H. osmophila, IFO 10832, KCTC 7680, Kloeckeraspora osmophila
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.