STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWRI3579_g3416Multisubstrate pseudouridine synthase 7. (698 aa)    
Predicted Functional Partners:
AWRI3579_g3808
Bifunctional protein RIB2.
  
 
 0.834
AWRI3579_g3786
54S ribosomal protein L10, mitochondrial.
   
   0.821
AWRI3579_g2638
54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.
   
   0.815
AWRI3579_g556
Mitochondrial GTPase 1.
   
   0.815
AWRI3579_g47
54S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.807
AWRI3579_g1329
tRNA modification GTPase MSS1, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
   0.802
AWRI3579_g1184
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
   0.802
AWRI3579_g2273
54S ribosomal protein L51, mitochondrial.
   
   0.801
AWRI3579_g638
54S ribosomal protein L19, mitochondrial; Belongs to the universal ribosomal protein uL11 family.
   
   0.800
AWRI3579_g3990
MIOREX complex component 8.
    
   0.797
Your Current Organism:
Hanseniaspora osmophila
NCBI taxonomy Id: 56408
Other names: ATCC 24231, CBS 313, CCRC 21475, CCRC:21475, DBVPG 6795, H. osmophila, IFO 10832, KCTC 7680, Kloeckeraspora osmophila
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.